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I'm Shahroz Rahman

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I'm a professional bioinformatician with expertise in genomics, proteomics, and computational biology. I help researchers and organizations analyze complex biological data, develop custom bioinformatics pipelines, and extract meaningful insights from genomic studies.

About Me

Professional Bioinformatician & Computational Biology Consultant

With a BS in Bioinformatics from GCUF and extensive research experience, I provide professional bioinformatics services to academic institutions, biotech companies, and research organizations worldwide. My expertise spans NGS analysis, single-cell genomics, variant calling, and multi-omics integration. I've contributed to 9+ peer-reviewed publications and successfully delivered numerous bioinformatics projects, combining strong computational skills with deep biological knowledge to solve complex research challenges.

Name Shahroz Rahman
Email shahrozrahman.me@gmail.com
Phone +92 (344)-6497495
Location Islamabad, Pakistan

09

Publications

03

Projects

20+

Certificates

02

Developed Apps

Professional Services

NGS Data Analysis

Comprehensive analysis of RNA-seq, ChIP-seq, and whole-genome sequencing data using state-of-the-art tools and pipelines.

  • Quality control & preprocessing
  • Differential expression analysis
  • Pathway enrichment analysis
  • Custom visualization

Pipeline Development

Custom bioinformatics pipeline development and automation for high-throughput data processing and analysis workflows.

  • Nextflow & Snakemake pipelines
  • Docker containerization
  • Cloud deployment
  • Documentation & training

Single-Cell Analysis

Advanced single-cell RNA-seq analysis including clustering, trajectory inference, and cell type identification.

  • Data preprocessing & QC
  • Cell clustering & annotation
  • Pseudotime analysis
  • Comparative studies

Multi-Omics Integration

Integrative analysis combining genomics, transcriptomics, and proteomics data for comprehensive biological insights.

  • Cross-platform integration
  • Network analysis
  • Biomarker discovery
  • Systems biology approaches

Consultation & Training

Expert consultation on bioinformatics strategies and hands-on training for research teams and organizations.

  • Project planning & design
  • Tool selection & implementation
  • Team training workshops
  • Ongoing support

Variant Analysis

Comprehensive variant calling, annotation, and interpretation for both germline and somatic mutations.

  • SNP/Indel calling
  • Structural variant detection
  • Clinical annotation
  • Population genetics analysis

Work & Education

Work Experience

Aug 2025 - Present

Bioinformatics Data Analyst

Freelancer - Providing bioinformatics analysis services including NGS data processing, single-cell analysis, and custom pipeline development.

Sep 2023 - Jul 2025

Computational Data Analyst

Research Assistant at Functional Genomics and Plant Tissue Culture Lab, GCUF. Conducted multi-omics analysis, developed bioinformatics tools, and contributed to 9 publications.

Oct - Nov 2022

Research Intern

OilSeed Research Institute, AYUB Research Institute, FSD. Worked on determination of fatty acid profile in oilseed crops.

Education

2019 - 2023

BS Bioinformatics

Government College University Faisalabad (GCUF). CGPA: 3.72/4.00. Department of Bioinformatics and Biotechnology.

2017 - 2019

Higher Secondary Education

BISE Faisalabad. Pre-Medical studies with focus on Biology, Chemistry, and Physics.

Ongoing

Continuous Learning

20+ certifications in bioinformatics, data science, and computational biology from Coursera, DataCamp, and other platforms.

My Skills

Programming

Python R Bash Linux HTML/CSS/JS

NGS & Omics

RNA-Seq Single-Cell Variant Calling ChIP-Seq Metagenomics

Data Analysis

DEG Analysis Pathway Analysis Machine Learning Visualization

Tools & Platforms

Jupyter RStudio Galaxy Git VS Code

Lab Techniques

PCR RT-PCR SDS-PAGE ELISA Cell Culture

Research

Scientific Writing Molecular Docking PPI Networks Phylogenetics

My Courses

Udemy

NGS and Microarray Data Analysis In Bioinformatics

A Practical, End-to-End Guide to Gene Expression Analysis Using NGS and Microarray Data

Enroll Now
Udemy

Computational Techniques for Protein 3D Structure Prediction

Learn how to Predict Protein 3D Structure using Computational Tools for Drug Discovery and more.

Enroll Now
Udemy

De-Novo Proteomics Data Analysis for Bioinformatics Research

Learn the best of proteomics data analysis from protein sequence retrieval to 3D structure prediction and much more!

Enroll Now
Udemy

A Comprehensive Guide to Databases in Bioinformatics

Unlock your True Potential as a Bioinformatician with Advanced Database Techniques

Enroll Now
Udemy

Sequence Alignment Made Simple for Research

Learn the best of sequence alignment through hands on practice exercises and best instructions.

Enroll Now

Publications

09 Publications
2023-2026 Coverage
03 Research Domains
Scholar Citation Source
Sort by:
Google Scholar Profile
2025
Research Article Citations on Scholar

Genome-wide Identification of bZIP transcription factors and their role toward drought stress and fruit development in Mangifera indica (Mango)

Rahman S, Haris M, Rehman A, Farooq MS, Naveed H, Waheed T, Sajjad M, Aslam MN, Ahmad S, Hassan MU, Qari SH

Crop and Pasture Science, 2025

bZIPDrought StressFruit Development
View Paper
2025
Book Chapter Citations on Scholar

Computational Approaches for Retrotransposon Investigations

Rahman A, Rahman S, Sajjad M, Ahmad S

In: Functional Genomics: Methods and Protocols, Volume 3. Taylor & Francis, 2025

RetrotransposonsComputational BiologyProtocols
View Chapter
2025
Research Article Citations on Scholar

Tissue Culture Optimization: Maize Callus Induction and Factors Affecting the Callus Efficiency

Haris M, Sajjad M, Irshad S, Hassan MU, Rahman S, Bukhari MAH, Akbar M, Waheed A, Ahmad S

Integrative Plant Biotechnology, 2025

Tissue CultureMaizePlant Biotechnology
View Paper
2025
Research Review Citations on Scholar

Effects of Exposure to Environmental Pollutants on Male Fertility

Mudassar M, Ishtiaq S, Riaz A, Rahman S, Akbar M, Batool F, Ahmad S

Annual Methodological Archive Research Review, 2025

Environmental HealthMale FertilityPollutants
View Paper
2026
Research Article Citations on Scholar

HCMdrugs: A Web-Based Database Cataloging the Drugs Available for the Treatment of Hypertrophic Cardiomyopathy

Haris M, Rahman S, Hassan MU, Sattar S, Sajjad M, Ahmad Z, Ahmad S

Journal of Computational Biophysics and Chemistry, 2026

DatabaseCardiomyopathyDrug Discovery
View Paper
2024
Research Article Citations on Scholar

Genome-wide profiling of bZIP transcription factors in Camelina sativa: implications for development and stress response

Rahman S, Rehman A, Haris M, Naveed H, Iqbal MW, Sajjad M, Ahmad S, Awais M

BMC Genomic Data, 2024

bZIPCamelinaStress Biology
View Paper
2024
Book Chapter Citations on Scholar

Precision Genome Editing with CRISPR-Cas9

Rahman S, Naveed H, Haris M, Aslam MN, Sajjad M, Ahmad S

In: Plant Functional Genomics: Methods and Protocols, Volume 2. Springer US, 2024

CRISPR-Cas9Genome EditingMethods
View Chapter
2024
Research Article Citations on Scholar

Regulatory role of AGC genes in heat stress adaptation in maize (Zea mays)

Rehman A, Rahman S, Ali MA, Ahmad S

Functional Plant Biology, 2024

AGC GenesHeat StressMaize
View Paper
2023
Research Article Citations on Scholar

Genome-wide exploration of bZIP transcription factors and their contribution to alkali stress response in Helianthus annuus

Rahman S, Rehman A, Ahmad S

Plant Stress, 2023

bZIPAlkali StressSunflower
View Paper

Featured Works

Bioinformatics Workflow Builder
App

Bioinformatics Workflow Builder

R Course
Course

R for Bioinformatics

CRISPR/Cas9 Book Chapter
Book Chapter

CRISPR/Cas9

Proteomics Course
Course

De Novo Proteomics

MiRNA-Toolkit Python Library
Python Library

MiRNA-Toolkit

2DGene App
App

2DGene

Phenotyping Book Chapter
Book Chapter

Phenotyping

BioPython Course
Course

BioPython

Protein-Protein Interaction
Bioinformatics

PPI Networks

Latest Blog Posts

Contact Me

Ready to collaborate on your next bioinformatics project? Let's discuss how I can help you achieve your research goals.

Currently Open for Collaborations and Consulting

Location

Islamabad, Pakistan

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